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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaaccccttttcttaattttgttactcatgatcttagaatttgagttcggacataactcaatcttacaaaaacccgatttttttgaagtgaga...

Basic information

species Glycine max
transcript GLYMA04G39370.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39370.3 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 1
TGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaac--cccttttcttaattttgttactcatgatcttagaatttgagttcggacataactcaatcttacaa-aaacccgatttttttgaagtgaga
|||   |||||| || |||||||||||| |||| ||| ||   |||||||||||||||||| ||||||| || ||||| || | |||||| || |||||||| |  || |    |||| | || || || ||| |  |  | |    | |    | |    ||||   |  |||| |   |   ||  |  |    ||     
TGTGTACTTGGCTGCCACCCTTTTCACCACTGCTGCTGCCTCCTCTTCTGCCAATGCTGGGGTCATTGACGACTACCTGGAAAAGAGCAAAGCGAACAAGgtttgttccaggatccttctttttatgtttttatttttatttt---gactcctatacaattataaacaatacttatactgaggtcggatcatgaatag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182896|gb|HO031631.1|HO031631
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|208321798|gb|GE119977.1|GE119977
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAAG
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAA-G
EST: gi|31475687|gb|CD417715.1|CD417715
EST:     CCTATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAG
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAG
EST: gi|7686649|gb|AW757306.1|AW757306
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|13481644|gb|BG510987.1|BG510987
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298170791|gb|HO015767.1|HO015767
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|19453001|gb|BM954411.1|BM954411
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|120531953|gb|EH260086.1|EH260086
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298192454|gb|HO036536.1|HO036536
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         AAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31461285|gb|CD403313.1|CD403313
EST:     GATCATTGATGATTACCTTGAGAGGAGCAAGGCTAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: GATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|5606154|gb|AI900252.1|AI900252
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31561236|gb|CD487074.1|CD487074
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298180062|gb|HO025277.1|HO025277
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31474606|gb|CD416634.1|CD416634
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298171219|gb|HO016251.1|HO016251
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAACTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298186593|gb|HO037226.1|HO037226
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         AAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|208111992|gb|GD912398.1|GD912398
EST:     TGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: TGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31561326|gb|CD487164.1|CD487164
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|193653557|gb|FK599555.1|FK599555
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTA
EST: gi|298182188|gb|HO026363.1|HO026363
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298171250|gb|HO016282.1|HO016282
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|12691149|gb|BG157485.1|BG157485
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298190651|gb|HO032772.1|HO032772
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|9899330|gb|BE608298.1|BE608298
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298179825|gb|HO025040.1|HO025040
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|213620168|gb|DB965432.1|DB965432
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31461922|gb|CD403950.1|CD403950
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCANCAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAA-CTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298179546|gb|HO028017.1|HO028017
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAGGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298163822|gb|HO012555.1|HO012555
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|12688380|gb|BG154716.1|BG154716
EST:     CCTTGAGAGGAGCAAGGCTAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|213602285|gb|DB958545.1|DB958545
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|5761199|gb|AI966562.1|AI966562
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCTCTTGGCAGCTACCCTTTTCACCTCTGCAGCTTCCAATTCTTCTGCCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaaccccttttcttaattttgttactcatgatcttagaatttgagttcggacataactcaatcttacaaaaacccgatttttttgaagtgaga

- - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG