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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtacatgaaggactcccaatacatgaccctttaccctttaattctcattttgtacttaattttgccttcataatgtagataagtttatgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTG

Basic information

species Glycine max
transcript GLYMA04G39370.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39370.4 (Glycine max), 3'ss of exon 1
lower sequence: AT5G64040.1 (Arabidopsis thaliana), 3'ss of exon 1
cttgtacatgaaggactcccaatacatgaccctttaccctttaattctcattttgtacttaattttgccttcataatgtagataagtttatgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTG
         | | | ||   ||| | | |  ||| ||  |   |     |  |  ||   | |||||  ||  |        | |  || ||   |||||||| | ||||| |||||||| || || || | ||||||||||||||| ||||||| ||| ||  ||||||| || ||||||||||||||||| |||||||
---------gtaagtctttgaatgcctcaatcttgacattgctaa----agatcctaaaaagttttggattttt--------tgaaattttg-attatagGAACTTAATGATAAGAAGAGATTGGCAACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTG

upper sequence: GLYMA04G39370.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0044g01410.t01 (Vitis vinifera), 3'ss of exon 1
-cttgtacatgaaggactcccaatacatgaccctttaccctttaattctcattttgtacttaattttgccttcataatgtagataagtttatgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTG
  |||| |  | |    ||    ||  |     |||    ||| | ||  ||    |  | ||   | |  | ||| || || |  | | |||    |||||| ||||| |||||||| ||||| ||||| |  |||||||||||||| ||||||||||| ||  |||| || |  |||||||||||||||||||||||||
gtttgttccaggatccttctttttatgtttttatttttattttgactcctatacaattataaacaatac--ttatactg-aggtcggatcatga---atagGAGTTGAACGACAAGAAAAGGTTGGCTACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298182896|gb|HO031631.1|HO031631
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|208321798|gb|GE119977.1|GE119977
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAAG
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAA-G
EST: gi|31475687|gb|CD417715.1|CD417715
EST:     CCTATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAG
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAG
EST: gi|7686649|gb|AW757306.1|AW757306
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|13481644|gb|BG510987.1|BG510987
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298170791|gb|HO015767.1|HO015767
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|19453001|gb|BM954411.1|BM954411
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|120531953|gb|EH260086.1|EH260086
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298192454|gb|HO036536.1|HO036536
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         AAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31461285|gb|CD403313.1|CD403313
EST:     GATCATTGATGATTACCTTGAGAGGAGCAAGGCTAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: GATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|5606154|gb|AI900252.1|AI900252
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31561236|gb|CD487074.1|CD487074
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298180062|gb|HO025277.1|HO025277
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31474606|gb|CD416634.1|CD416634
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298171219|gb|HO016251.1|HO016251
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAACTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298186593|gb|HO037226.1|HO037226
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         AAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|208111992|gb|GD912398.1|GD912398
EST:     TGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: TGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31561326|gb|CD487164.1|CD487164
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|193653557|gb|FK599555.1|FK599555
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTA
EST: gi|298182188|gb|HO026363.1|HO026363
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298171250|gb|HO016282.1|HO016282
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|12691149|gb|BG157485.1|BG157485
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298190651|gb|HO032772.1|HO032772
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|9899330|gb|BE608298.1|BE608298
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298179825|gb|HO025040.1|HO025040
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|213620168|gb|DB965432.1|DB965432
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|31461922|gb|CD403950.1|CD403950
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCANCAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAA-CTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298179546|gb|HO028017.1|HO028017
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAGGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|298163822|gb|HO012555.1|HO012555
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|12688380|gb|BG154716.1|BG154716
EST:     CCTTGAGAGGAGCAAGGCTAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|213602285|gb|DB958545.1|DB958545
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
EST: gi|5761199|gb|AI966562.1|AI966562
EST:     CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAG                         GAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA
genomic: CCAATGCTGGGATCATTGAAGATTACCTTGAGAGGAGCAAGGCCAACAAGgtataatcaa ... tgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcattttgtacttaattttgccttcataatgtagataagtttatgtgctatagGAATTGAATGACAAGAAGAGGTTAGCTACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTG
           acttaat  putative branch site (score: 4)
     ttttgtacttaatttt  TA-rich tract