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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttatttgttttttctgttgtgttgtaatactacttttgatggcaattagtgtaaactgaattgtgtgatgcagGGTCTGGTCTAAAAGTATTACACTCGCATGACATTATTCACAGAGACTTGAAACCAGAG

Basic information

species Glycine max
transcript GLYMA04G39350.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058572|gb|CA801486.1|CA801486
EST:     TCATGGGAGAGTTCAGCAACAAATAGCCAGAAAATTCATGCAGCAGCTTG                         GGTCTGGTCTAAAAGTATTACACTCGCATGACATTATTCACAGAGACTTGA
genomic: TCATGGGAGAGTTCAGCAACAAATAGCCAGAAAATTCATGCAGCAGCTTGgtaactttta ... tgtgatgcagGGTCTGGTCTAAAAGTATTACACTCGCATGACATTATTCACAGAGACTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgtaatactacttttgatggcaattagtgtaaactgaattgtgtgatgcagGGTCTGGTCTAAAAGTATTACACTCGCATGACATTATTCACAGAGACTTGAAACCAGAG
               ttttgat  putative branch site (score: 4)
      taatacta  TA-rich tract