1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTGAAGTTGAAGTTTGGGGACTTGGTGGGAAAGTAGCAAAGGAAGTGCAGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctaccttgtcctgttctccgattagtcattacaaatattaacttttgataaatcaaagaacagcaataacatttttttgtcattctattgtttag
species | Glycine max |
transcript | GLYMA04G39340.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGEST: gi|254319085|gb|GR828813.1|GR828813
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGEST: gi|58023713|gb|CX710454.1|CX710454
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGEST: gi|51341487|gb|CO982804.1|CO982804
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGEST: gi|58020079|gb|CX706821.1|CX706821
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGEST: gi|9901717|gb|BE610685.1|BE610685
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
EST: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAA GTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
genomic: AGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctacc ... tattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGAAGTTGAAGTTTGGGGACTTGGTGGGAAAGTAGCAAAGGAAGTGCAGAACTCTTACAAGAAGAGAGAAGAGCTTTTCACTGAGCAAAGAAGAAAAgtaccctaccttgtcctgttctccgattagtcattacaaatattaacttttgataaatcaaagaacagcaataacatttttttgtcattctattgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA