1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATGGGCAATTTCTATCACACAGAAAAGTACAAGAAATGAAGAGATTTCTAGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCGgtttgcatctctgaccctcaagcatagcttcatcatgttattgtgctttaaatagtcttggacacttgtcaattttcttttttttttgttaaaatgaggc...
species | Glycine max |
transcript | GLYMA04G39340.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCG TTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGGEST: gi|298188913|gb|HO035606.1|HO035606
genomic: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCGgtttgcatct ... tgcattatagTTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGG
EST: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCG TTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGGEST: gi|193714891|gb|FK652816.1|FK652816
genomic: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCGgtttgcatct ... tgcattatagTTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGG
EST: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCG TTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGG
genomic: AGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCGgtttgcatct ... tgcattatagTTCATCCACTCATGGAAGAGGCCTTGGCAGATTTTGGTCTCATGTTGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGGCAATTTCTATCACACAGAAAAGTACAAGAAATGAAGAGATTTCTAGAGCATTTATAAGCAATGGAGGTGGAATGGATAATAACCTTCTTTATCGgtttgcatctctgaccctcaagcatagcttcatcatgttattgtgctttaaatagtcttggacacttgtcaattttcttttttttttgttaaaatgaggc
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcaa