1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtaataaacctgatataatttcagttgtcagtttatggtagttagctgtaacactgaccagagattatgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGTGATGCTGCACCGATGGCCTATATTGA
species | Glycine max |
transcript | GLYMA04G39250.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|298187006|gb|HO034155.1|HO034155
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCATATCGGTACAA GGGTAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192311623|gb|FK003106.1|FK003106
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|192310244|gb|FK002600.1|FK002600
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGACTGGGEST: gi|192310245|gb|FK002601.1|FK002601
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGACTGGGEST: gi|192311622|gb|FK003105.1|FK003105
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|31470250|gb|CD412218.1|CD412218
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|20814760|gb|BQ299238.1|BQ299238
genomic: GCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCATATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|7587908|gb|AW703714.1|AW703714
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|298174461|gb|HO014606.1|HO014606
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCATATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTAGGATCCGTATTCGAGTGGGEST: gi|23064422|gb|BU579195.1|BU579195
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|298189819|gb|HO038222.1|HO038222
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCATATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|14009072|gb|BG725667.1|BG725667
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGEST: gi|16343728|gb|BI969323.1|BI969323
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
EST: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAA GGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
genomic: GGAGATGATGTCCTTCACAAGCTGTTTACAGAACTGGCTTATCGGTACAAgtaagtaata ... tgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGG
agttgtcagtttatggtagttagctgtaacactgaccagagattatgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGTGATGCTGCACCGATGGCCTATATTGA
cactgac putative branch site (score: 2)
attatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaataaacctgatataatttcagttgtcagtttatggtagttagctgtaacactgaccagagattatgttatgcagGGATAGAGCTGGAGGATACACCAGATTGCTTCGGACCCGTATTCGAGTGGGTGATGCTGCACCGATGGCCTATATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC