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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGGGTTAGGGTTAGGGTTAGGGTTTCTGCGTTTATGCGAAGATGACTAAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcatactttcacttcattcgttttttgttttgttttgttttgtttgcagagatgctgaatcgtgcgttcccttttatctag

Basic information

species Glycine max
transcript GLYMA04G39250.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268298|gb|CA819361.1|CA819361
EST:     GAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: GAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|298187006|gb|HO034155.1|HO034155
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|192311623|gb|FK003106.1|FK003106
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|192310244|gb|FK002600.1|FK002600
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGTAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|192310245|gb|FK002601.1|FK002601
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGTAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|192311622|gb|FK003105.1|FK003105
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|7587908|gb|AW703714.1|AW703714
EST:     CGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: CGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|298174461|gb|HO014606.1|HO014606
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|23064422|gb|BU579195.1|BU579195
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|298189819|gb|HO038222.1|HO038222
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|14009072|gb|BG725667.1|BG725667
EST:     AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: AAGTTCAGGAAATTGGGTCGACCCACCGGTCACCGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
EST: gi|16343728|gb|BI969323.1|BI969323
EST:     CGAATGTCCATGCTCAG                         AACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC
genomic: CGAATGTCCATGCTCAGgttagttcat ... ttttatctagAACCATGGTCTCGCAGTTGGTGAAGCACGAGCGCATCGAAACTACTGTCGC