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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTGGATTCCCCTGCTTCAAAGGTGGTCCACGGACAATACAGAACCTTAGAAAGCGCTTCCATCTCAATTTAACAGAAGAGgtttcaatactaatattagttactctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcag

Basic information

species Glycine max
transcript GLYMA04G39150.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39150.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 14
GACTCTGGATTCCCCTGCTTCAAAGGTGGTCCACGGACAATACAGAACCTTAGAAAGCGCTTCCATCTCAATTTAACAGAAGAGgtttcaatactaatatta--gttactctc---ttaactgtaattttttt-------tgcctgtttgctacatttttttctttcttggcag
|| ||||| ||||| ||||||||||||||||| ||||||||||| ||| | || || || |||||||| | |||||||||||||||||  ||  |||| |||   | | | |    ||| ||   || |||||       ||    ||  |   |||| ||  |||||  ||||
GATTCTGGTTTCCCATGCTTCAAAGGTGGTCCCCGGACAATACAAAACTTAAGGAAACGATTCCATCTGAGTTTAACAGAAGAGgttt-gattttaattttatcatcattttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttct-agcag