Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaatactaatattagttactctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT

Basic information

species Glycine max
transcript GLYMA04G39150.1
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 14
-----gtttcaatactaatattagttactctcttaactgtaattttttt-------tgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
      ||| |||  ||  || | ||    | ||| ||   || |||||       ||    ||  |   |||| ||  |||||  |||||||||||||||||||||||| ||||| || ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
gtttgattttaattttatcatca-ttttagtattagctaatatatttttgagatgatggtcattgacagtatttcttgatttct-agcagCAATGTGTATCTTTGGTGCTCTCCCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGATTATTATCAGAGGGTTTTAAATGGGATCTTGT

upper sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 3'ss of exon 15
------------gtttcaata--ctaatattagttactctcttaactgta--attttttttgcctgtttgctac-----atttttttctttcttg-gcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
               | | ||  |  ||||||  |  |   |    ||||  ||   | || |   |   |||      ||||| ||   |  || ||||||||| ||||| |  ||| |    || |||   |  |||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| ||  | |
gacaagagattgacatgagtagccatatattaagtggtacatccgatgtatgatggatgttacgcttgaactaattgggattttattgcatgctgtgcagCAATGCGTATCATCTGTGTTGGAGCTTATTGCTAAAAGCCTGGATGCATGGCGGACACGGCAATATGATTATTATCAGAAGGTTCTGAATGGTATTCTTT

upper sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 3'ss of exon 15
------------------gtttcaatactaatattagttactctcttaactgtaatttt---ttttgcctgtttgct-acatttttttctttcttgg-cagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
                   | | | ||| |||      |  || |  || |||  || |    |||  |  |  ||| ||||| |  |   | |||  |||||||| ||||| |  ||  |    || ||    |  || ||||||||||||||||||||||||||||||||||| |||| ||| |||||||| ||  | |
acttttgtttggcaatgcatctgattacgaattggcaatgttc-cgaaattgtttttgtgaactttttccttcagctgacattatactgccttttgttcagCAATGCGTATCATCAGTTTTGGAGCTTATCGCTAAAAGTCTGGATGCATGGCGGACACGGCAGTATGATTATTATCAGAAGGTGTTGAATGGTATTCTTT

upper sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ26597 (Selaginella moellendorffii), 3'ss of exon 15
gtttcaatactaatattagttactctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
        | | ||  |||  ||| |   |||| |  |||  ||   ||  | |      ||| ||  |||||||||||||||||| || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | ||||||||||| ||    |
-----gtgagttatcctaga-actttgcaaactttg-tttcgttcttctcatggtctttctttgtttgttcttggcagCAATGTGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT

upper sequence: GLYMA04G39150.1 (Glycine max), 3'ss of exon 16
lower sequence: EFJ06373 (Selaginella moellendorffii), 3'ss of exon 17
gtttcaatactaatattagttactctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
        | | ||  |||  ||| |   |||| |  | |  ||   ||  | | |    ||| ||  ||||||||||||||| || || |||||  | || ||||| ||||||||| | ||||| ||||| || |||||||||||||| || ||  | ||||||||||| ||    |
-----gtgagttatcctaga-actttgcaaactttg-tctcgttcttctcatggtttttctttgtttgttcttggcagCAATGCGTCTCCTTGGTCTTGTCGCTCATCAGCAGTAGCTTAGATGCTTGGCGTACTCGGCAGTATGATTACTATCAACGTGTTTTGAATGGAATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttaactgtaattttttttgcctgtttgctacatttttttctttcttggcagCAATGTGTATCTTTGGTGCTTTCCCTCATTAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTATGATTATTACCAGAGGGTTTTGAATGGGATATTGT
  tcttaac  putative branch site (score: 2)
              ttttttttgcctgttt  putative PPT
     taactgtaattttttt  TA-rich tract