1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTGTTCAGAGAAACCATTGAGCTCATGTTCGAGAACGATGATGGCGTCACCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGgttcgttggtttccactttacttcttttttttttcctctcaaccctccaattaattaggagaaagcaactcctgaccaagaatcaaactcggtattaccg...
species | Glycine max |
transcript | GLYMA04G39130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAG GTTTCAGCAGGCATCATGTTCACTAAGGGTGTTTTGTCGTGTTTACAATACEST: gi|207716170|gb|GD698848.1|GD698848
genomic: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGgttcgttggt ... gcaattctagGTTTCAGCAGGCATCATGTTCACTAAGGGTGTTTTGTCGTGTTTACAATAC
EST: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAG GTTTCAGCAGGCATCATGTTCACTAAGGGTGTTTTGTCGTGTTCGCAATACEST: gi|193426129|gb|FK390850.1|FK390850
genomic: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGgttcgttggt ... gcaattctagGTTTCAGCAGGCATCATGTTCACTAAGGGTGTTTTGTCGTGTTTACAATAC
EST: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAG GTTTCTAGCAGGCA
genomic: CCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGgttcgttggt ... gcaattctagGTTTC-AGCAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTTCAGAGAAACCATTGAGCTCATGTTCGAGAACGATGATGGCGTCACCAAGAGGCTTCTTAACATTGGCGTTTTTCGATCCATTGACGTTTTGGAGgttcgttggtttccactttacttcttttttttttcctctcaaccctccaattaattaggagaaagcaactcctgaccaagaatcaaactcggtattaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcca