1 5' 3' | 2 5' 3' | 3 5' 3' |
AACATGAGTTTTCAGAACTGGTAAAGAGGGGGTCTACAGCAGAGGACGTAGGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgactaggaaagcagaacattcttcaatgcaataaagtagatttgcttttatttatatttactttagttttttctgttttctgtttcagttgtt...
species | Glycine max |
transcript | GLYMA02G12330.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAG AGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGAEST: gi|208287116|gb|GE082218.1|GE082218
genomic: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgac ... tactctgtagAGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGA
EST: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAG AGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGAEST: gi|298196401|gb|HO041144.1|HO041144
genomic: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgac ... tactctgtagAGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGA
EST: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAG AGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGAEST: gi|208298838|gb|GE091435.1|GE091435
genomic: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgac ... tactctgtagAGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGA
EST: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAG AGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGA
genomic: GGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgac ... tactctgtagAGAACCACGCCCTTGGGAAGAACCTGGTTCTTCAAAGCCTTCACTCGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATGAGTTTTCAGAACTGGTAAAGAGGGGGTCTACAGCAGAGGACGTAGGTGCAGGTCATGCTGAAGCAGCAAGGGTTCAAGGTCTTGGTTTTGCAAGgtaaagtgactaggaaagcagaacattcttcaatgcaataaagtagatttgcttttatttatatttactttagttttttctgttttctgtttcagttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG