1 5' 3' | 2 5' 3' | 3 5' 3' |
AAAGGCAAAATCTTTTTGAACAGACGAAGGAAAAAAACGCAGTGATCACGAGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATCgtaagtcatgttcgttttatcgctattttccaaaaattctctttctctctctctttttgggtattgaatcgttttcgaaatctgtcaaatattgaaattg...
species | Glycine max |
transcript | GLYMA02G12330.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATAC AATTCACTTGGGEST: gi|193391354|gb|FK355035.1|FK355035
genomic: GCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGAT-Cgtaagtcatg ... tgatggccagAATTCACTTGGG
EST: AGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATC AATTCACTTGGGEST: gi|298196401|gb|HO041144.1|HO041144
genomic: AGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGG
EST: AGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATC AATTCACTTAGGAGGATGTGAAAGCTGATAAGCATAGGGAGAACTATCTTG
genomic: AGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGCTGATAAGCATAGGGAGAACTATCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCAAAATCTTTTTGAACAGACGAAGGAAAAAAACGCAGTGATCACGAGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGTGGTCGAGATCgtaagtcatgttcgttttatcgctattttccaaaaattctctttctctctctctttttgggtattgaatcgttttcgaaatctgtcaaatattgaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc