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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgttggactctacctctgagaatccaaaagccgagtaactggattttccttcagttggcttatatatattataccaataggataggtgcttga...

Basic information

species Glycine max
transcript GLYMA02G06710.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06710.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G019999_T01 (Zea mays), 5'ss of exon 5
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgttggactctacctctgagaatccaaaagcc-----gagtaactggattttc----ctt--cagttggcttatatatattatac-caataggataggtgcttga----------------------------------------------------
 || |  |||||    |||||| | |  |||||||| ||||||||  ||||| | ||  | ||||| ||||| ||||| ||||| ||||||||||||||||| | ||  |||| |   | |    |||||  |||  |      ||  |  ||  |  ||    |||  ||||| | ||  | |||  | ||  ||   | |   |  || |                                                    
GCTAAGAGAACCATATGTTAGGACATTATTTGTTCAAGCTGATGGCATCAAGCTGCTCATTCCCTTAATTTCCCCAGCTTCCACACAACAGTCAATTCAGgtga-ttgcttggccctaagcatctagaatggaaatacgttggggaagagttgtctcatcaggtcttagcagtttgattgcagataacagacataaactgttccatctttcaactctagaactaacttcctcacctgtgttcctttttgttatttcttgtgcag

upper sequence: GLYMA02G06710.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G42050.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgttggactctacctctgagaatccaaaagccgagtaactggattttccttcagttggcttatatatattata----ccaa--taggataggtgcttga----
 |||||||||||||| || || || || ||||||||||| |||||||| ||||||||||| || || ||||| |||||||||||||| ||||| || |||||||          || ||  ||| |       |      ||| | |     |||| | |    |   |||  ||||  |    ||||   | |  |  | ||| |    
GCTTAAGGAACCTGTTGTCAGATCGTCATTTGTTCAGGCAGATGGGGTGAAGTTACTTGTCCCTTTAATTTCCCCAGCATCCACTCAGCAGTCTATCCAGgtaa----------ctgtatatctaatggaagtagttttcagtgaataatgcttccataaagcaggaaataagtattgcagtttccaaatcatgcaaaatccttaacgga

upper sequence: GLYMA02G06710.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv16s0039g01610.t01 (Vitis vinifera), 5'ss of exon 8
ACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCTGATGGGGTCAAGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgttggactctacctctgagaatccaaaagccgagtaactggattttccttcagttggcttatatatattataccaataggataggtgcttga
||| ||||||||  |||| || |||||||||||||| || |||||||| ||||| ||| | || || ||||| |||||||||||||| || || || ||||||  |||  |      |     | |  |   || | || |  | |          | | |        |  ||||  |     ||  |           
ACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGgtagcttttgtcattattggtggttaacaagtaagaaccaatcatcgtagccaagttactgaaaatgactgcatatcttctttgtaacag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732408|gb|BM527028.1|BM527028
EST:     TACTTGTGCCCTTGATTTCGCCTA--AACCACTCAACAGTCAATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: TACTTGTGCCCTTGATTTCGCC-AGCATCCACTCAACAGTCAATTCAGgtaagtttgt ... tcttcggcagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|208209964|gb|GE002233.1|GE002233
EST:     AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgt ... tcttcggcagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|11273796|gb|BF324191.1|BF324191
EST:     AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAG                         CTTCTTTATGAAAC
genomic: AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgt ... tcttcggcagCTTCTTTATGAAAC
EST: gi|9258429|gb|BE346576.1|BE346576
EST:     AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgt ... tcttcggcagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
EST: gi|5770507|gb|AI973681.1|AI973681
EST:     AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAG                         CTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA
genomic: AGTTACTTGTGCCCTTGATTTCGCCAGCATCCACTCAACAGTCAATTCAGgtaagtttgt ... tcttcggcagCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCA