1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgaataaaaaaattgcatgttatatcttaagatgtgagtaggttcagttgtatgtaatacacatgcattcttactttcgtctatttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGG
species | Glycine max |
transcript | GLYMA02G06710.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCEST: gi|11273796|gb|BF324191.1|BF324191
genomic: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGC
EST: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCEST: gi|9258429|gb|BE346576.1|BE346576
genomic: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGC
EST: TATTGATGATGTTTTAATAGGATTGGTAAAATGGNTTTGTGAACAG TTGAAGAAACNTTCTCATCTTATTCGTGGAGTCCCAANTGCTATCAATTGCEST: gi|5770507|gb|AI973681.1|AI973681
genomic: TATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGC
EST: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAG TTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGC
genomic: CCACTATTGATGATGTTTTAATAGGATTGGTAAAATGGCTTTGTGAACAGgtatgtgata ... atatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGC
cagttgtatgtaatacacatgcattcttactttcgtctatttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGG
ttcttac putative branch site (score: 2)
tatttattatatctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaataaaaaaattgcatgttatatcttaagatgtgagtaggttcagttgtatgtaatacacatgcattcttactttcgtctatttattatatctgtagTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCAACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - aaaaaaa
- - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca