1 5' 3' | 2 5' 3' | 3 5' 3' |
AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttgattctttatttcagctcagcattctctttcttcattcaaaatgtcatatgttgttttcataatcttgcatttggcatggaggcaaaacatt...
species | Glycine max |
transcript | GLYMA01G06270.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCC-AAAATGCAGAAAEST: gi|193356756|gb|FK318860.1|FK318860
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAA-GATCTTTTCTGGTGTACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|208067670|gb|GD866080.1|GD866080
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|207687730|gb|GD668527.1|GD668527
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTACCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|193448027|gb|FK411464.1|FK411464
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGACAAAAAGEST: gi|208298032|gb|GE093247.1|GE093247
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAG
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAA-GTACCCAAAATGCAGAAEST: gi|193308195|gb|FK274862.1|FK274862
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGT-CCCAAAATGCAGAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|208137739|gb|GD938403.1|GD938403
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|193367185|gb|FK329869.1|FK329869
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTGTACCAGGGEST: gi|298190449|gb|HO032570.1|HO032570
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGG
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|193587540|gb|FK542575.1|FK542575
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGGTGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAAEST: gi|207705250|gb|GD687282.1|GD687282
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAAGTCCCAAAATGCAGAAA
EST: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG GGAAAGATCTTTTCTGGTATACCAGGGATAAAAAAGCCCCAAAATGCAGAA
genomic: GAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttga ... aattcaacagGGAAAGATCTTTTCTGGTATACCAGGGATAAAAA-GTCCCAAAATGCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAGgtaaagttgattctttatttcagctcagcattctctttcttcattcaaaatgtcatatgttgttttcataatcttgcatttggcatggaggcaaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG