1 5' 3' | 2 5' 3' | 3 5' 3' |
...gattttcacaaaattcatgcttaggagtaaaaaacttttgtatataacttcaatgatttatgtatgatatcgatgaacgtgttttactcttgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG
species | Glycine max |
transcript | GLYMA01G06270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|193356756|gb|FK318860.1|FK318860
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|208067670|gb|GD866080.1|GD866080
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTEST: gi|207687730|gb|GD668527.1|GD668527
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAA-TTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTT
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTACCTTGEST: gi|193448027|gb|FK411464.1|FK411464
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|208298032|gb|GE093247.1|GE093247
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: GGCGGTCGAGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|193308195|gb|FK274862.1|FK274862
genomic: GGCGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCACAGGGAGAACTATCTTGEST: gi|208137739|gb|GD938403.1|GD938403
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|208176200|gb|GD973885.1|GD973885
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|193367185|gb|FK329869.1|FK329869
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|298190449|gb|HO032570.1|HO032570
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGCGGCGGTCGAGATC AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGEST: gi|193587540|gb|FK542575.1|FK542575
genomic: CGCAGACATGTATCATCCAACAAGAGGTGGCGTTCGTGGCGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
EST: CGGTCGGGATT AATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
genomic: CGGTCGAGATCgtaagtcatg ... tgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTG
aacttcaatgatttatgtatgatatcgatgaacgtgttttactcttgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG
ttttactctt CT-rich tract
atttatgtatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttcacaaaattcatgcttaggagtaaaaaacttttgtatataacttcaatgatttatgtatgatatcgatgaacgtgttttactcttgatggccagAATTCACTTGGGAGGATGTGAAAGTTGATAAGCATAGGGAGAACTATCTTGGTCACAGTATCAAGGCTCCGGTTGGAAGATGGCAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - tcatgct
- - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaacg