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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCATTGTTTGGAGTGACTTTTCGGTACACTATAAGGAGAAATTTGGATGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatattaccatgcttacatgttaaatatgttgaaattttgtctgcatcgatttagattttagataaaatagtatgttgtcttttgtggtcttgagttgaatgctttcttgaaacagtgcaatctaaaaaaatttaatggtaatactgaaacaaacttgtgatgcag

Basic information

species Glycine max
transcript GLYMA0048S00250.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306586|gb|CD391789.1|CD391789
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|214006705|gb|DB987587.1|DB987587
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|6951902|gb|AW423970.1|AW423970
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|9984936|gb|BE659044.1|BE659044
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|31461072|gb|CD403100.1|CD403100
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|192329029|gb|FK021411.1|FK021411
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGCATTGTTTGGAGTGACTTTTCGGTACACTATAAGGAGAAATTTGGATGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatattaccatgcttacatgttaaatatgttgaaattttgtctgcatcgatttagattttagataaaatagtatgttgtcttttgtggtcttgagttgaatgctttcttgaaacagtgcaatctaaaaaaatttaatggtaatactgaaacaaacttgtgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT