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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccatattaccatgcttacatgttaaatatgttgaaattttgtctgcatcgatttagattttagataaaatagtatgttgtcttttgtggtcttgagttgaatgctttcttgaaacagtgcaatctaaaaaaatttaatggtaatactgaaacaaacttgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCTTCTTGTCACATGCCCAGGAAGGGACAATTTATTTGTCTGAGAATCTTTT

Basic information

species Glycine max
transcript GLYMA0048S00250.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31306586|gb|CD391789.1|CD391789
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|214006705|gb|DB987587.1|DB987587
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|6951902|gb|AW423970.1|AW423970
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|9984936|gb|BE659044.1|BE659044
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|31461072|gb|CD403100.1|CD403100
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
EST: gi|192329029|gb|FK021411.1|FK021411
EST:     TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAG                         GTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT
genomic: TGATGTTCAACTTAAGACAGGGGTAGCAGCAGCTTTTGGTGTTGTTAAAGgtaaccatat ... tgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagtgcaatctaaaaaaatttaatggtaatactgaaacaaacttgtgatgcagGTCTCGCAACCTTAGGTGGTGGACCACTTCCTGAACCAAACATTGAAAGCTTCTTGTCACATGCCCAGGAAGGGACAATTTATTTGTCTGAGAATCTTTT
        aatctaaaaaaattta  TA-rich tract