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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAGgtactttctctcatcaactgtttggtgtcatttctttggtatgggcgtcgtaagtaattcgatatttccacgcag

Basic information

species Glycine max
transcript GLYMA0042S00440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0042S00440.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G18400.3 (Arabidopsis thaliana), 5'ss of exon 8
TGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAGgtactttctctcatcaactgtttggtgtcatttctttggtatgggcgtcgta--agtaattcgatatttccacgcag-----------------
|||||||| || ||||| ||| | ||| |||| |||||||||||||| |||||  |||||||||| ||||||||||||  |     | | |  | | |     ||||     |   ||    || |   |  ||| |    | | || | |                  
TGTGGGCTCGGTGATGCCTTCCGCTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGAAGgtaactgaatccttta--tatctatcaccattgtaaagtcttgttaatccttttaagaatacaccttattcatgtaacttttcttcctctttag