Sequence
atgc intronic sequence ATGC exonic sequence...gctccttgcaaatagttaccgtctatctatcctctaatactatttcaaatttttttctcccgtaattggcattgctctcaaagttgtctttggtctgcagTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAG
Basic information
species | Glycine max |
transcript | GLYMA0042S00440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA0042S00440.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G18400.3 (Arabidopsis thaliana), 3'ss of exon 7
gctccttgcaaatagttaccgtctatctatcctctaatactatttcaaatttttttctcccgtaattggcattgctctcaaagttgtctttggtctgcagTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAG
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-------gtaagct-tctttacccatctctttctcagtatgcattggatttttggttccacaagactgaaaat-ttcttaaacaattcttt------cagTGTGGGCTCGGTGATGCCTTCCGCTGCGGTACATGCCCTTACAAGGGTCTGCCACCCTTCAAATTAGGCGAGAAG
upper sequence: GLYMA0042S00440.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g01180.t01 (Vitis vinifera), 3'ss of exon 6
gctccttgcaaatagttaccgtctatctatcctctaatactatttcaaatttttttctcccgt------aattggcattgctctcaaagttgtctttggt---ctgcagTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAG
|| | || | | ||| ||| | || |||| || | || | || | | ||| || ||| | ||| ||||||||||| |||| ||||| ||| ||||| |||| |||||||||||||| || ||| | |||||| |||| || |||
---------ggatttatcaaatcattttttcccttaaccgtgttctaaatgttctattctaattaaaaaaaaaaaaaaagttctaaatgttttattttacatcctgcagTGTGGATTAGGAGATGCCTTCCGGTGCGGTACATGCCCTTACAAGGGTCTTCCTCCATTCAAACTGGGGGATAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaatttttttctcccgtaattggcattgctctcaaagttgtctttggtctgcagTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAG
ttgtcttt CT-rich tract
ttttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctccttgcaaatagttaccgtctatctatcctctaatactatttcaaatttttttctcccgtaattggcattgctctcaaagttgtctttggtctgcagTGTGGGCTAGGGGATGCTTTCAGGTGCAGTACCTGCCCTTACAAGGGACTGCCTGCCTTCAAATTGGGCGAGAAG
- -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctctc