Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcctctcgatttctctcagttaaacactatgttagtgattccttgatttattattaaccttcataaagaacttcgtttaacatatatttttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCCATTGTTCACAACACAACGGTTTTTTCGTTGCTATTTTCTCAACTTATCG

Basic information

species Glycine max
transcript GLYMA0041S00290.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00290.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g08490.t01 (Vitis vinifera), 3'ss of exon 5
atcctctcgatttctctcagttaaacactatgttagtgattccttgatttattat-taaccttcataaag---aactt----cgtttaacatatatttttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCCATTGTTCACAACACAACGGTTTTTTCGTTGCTATTTTCTCAACTTATCG
         |  |   | ||    ||| | | ||| |  ||  |   ||| || | | ||| |||   |    |||||     | | | | |  | | ||| ||||||||||||||||| || ||  ||||||| || ||||||||| |||| ||||| ||||| |||||||||||  | || || ||  | ||  | ||  | || |
-------taaaattatttagcagcacagttt-ttacttgtttttccttttgttttatgaccatcaatgaacttaacttgtgatgctaatcttccaatatttgctccagATTATCAACGTGTATATATCAAAATATGAAAGTGGGGGAAAGTTTTGGCCGATTGTGCACAACACAACAATCTTCTCATTAGTGTTGGCACAGATAATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524654|gb|BU083465.1|BU083465
EST:     CCTTCTTGTTGGTCTACTTTTTCATTGCTTACCTTGTTTATCGAAACCAG                         ATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC
genomic: CCTTCTTGTTGGTCTACTTTTTCATTGCTTACCTTGTTTATCGAAACCAGgtcagtaaat ... ttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC
EST: gi|6070731|gb|AW100118.1|AW100118
EST:     CATTGCTTACCTTGTTTATCGAAACCAG                         ATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC
genomic: CATTGCTTACCTTGTTTATCGAAACCAGgtcagtaaat ... ttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC
EST: gi|12774172|gb|BG239099.1|BG239099
EST:     CCTTCTTGTTGGTCTACTTTTTCATTGCTTACCTTGTTTATCGAAACCAG                         ATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC
genomic: CCTTCTTGTTGGTCTACTTTTTCATTGCTTACCTTGTTTATCGAAACCAGgtcagtaaat ... ttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttattattaaccttcataaagaacttcgtttaacatatatttttttctccagATTATCAACGTATACATTACAAAATACGATAGTGGGGGACAGTTCTGGCCCATTGTTCACAACACAACGGTTTTTTCGTTGCTATTTTCTCAACTTATCG
                                      tatatttttttctcc  CT-rich tract
                           ttcgtttaacatatat  TA-rich tract