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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactccctttctctctgcccctatccacaccccttttctttcattcaaccctttaaaactaattaagcttgctttagATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAAATTTATGAACATTTGCGTTCAGCCTACAACCAGTCCAGTTTAATGCCAC

Basic information

species Glycine max
transcript GLYMA0041S00290.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933083|gb|BU550222.1|BU550222
EST:     AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAG                         ATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA
genomic: AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAGgtaaaactcc ... cttgctttagATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA
EST: gi|22524654|gb|BU083465.1|BU083465
EST:     AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAG                         ATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA
genomic: AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAGgtaaaactcc ... cttgctttagATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA
EST: gi|6070731|gb|AW100118.1|AW100118
EST:     AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAG                         ATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA
genomic: AGTATTGTAGGCAACGGTTTCTCCCAGTATTTAGGAGCAATTCAGCACAGgtaaaactcc ... cttgctttagATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccacaccccttttctttcattcaaccctttaaaactaattaagcttgctttagATTCTTATTGACTTGGATCGGAGAGATGGGCACAGTGGAAGGATGGAAGAAATTTATGAACATTTGCGTTCAGCCTACAACCAGTCCAGTTTAATGCCAC
                                  aactaat  putative branch site (score: 2)
                                             cttgcttt  putative PPT
                             tttaaaactaattaa  TA-rich tract