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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaactttttctatgtagtgggtgctcttgtggaaaattttctgttaattgaatagttcaagacatagttgttatccatttaattttttatgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGTAGTTCAAGTTCTGGATGTTGGCTGTGGTGTGGCCAGTTTTTCAGCATAT

Basic information

species Glycine max
transcript GLYMA0024S00260.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0024S00260.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G015126_T01 (Zea mays), 3'ss of exon 2
ttgaactttttctatgtagtgggtgctcttgtgg-aaaattttctgttaattgaatagttcaagacatagttgttatccatttaattttttatgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGTAGTTCAAGTTCTGGATGTTGGCTGTGGTGTGGCCAGTTTTTCAGCATAT
| || |      || ||  |   || | ||||   |  |  |||| || |||   ||     |      |||  | |   |||  |  || || |||||||| ||||| ||||||| || |||    |||||||||| |||||||| || |||||||||||| |||||||||| |||||||| || || ||||| ||||||
tggagcaacaatta-gttatatatgattttgttctactaccttctttttattttctaaaaggattttctgtttatgtagtttttgtaattgatcaatgcagGCTAGGAAATATGATGACAAATAGTACTGGTGATCTTCGTTCTGCCGGAGTAGTTCAAGTTTTGGATGTTGGATGTGGTGTTGCTAGCTTTTCTGCATAT

upper sequence: GLYMA0024S00260.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G10200.1 (Arabidopsis thaliana), 3'ss of exon 2
ttgaactttttctatgtagtgggtgctcttgtggaaaattttctgttaattgaatagttcaagacatagttgttatccatttaattttttatgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGTAGTTCAAGTTCTGGATGTTGGCTGTGGTGTGGCCAGTTTTTCAGCATAT
                     |    |  | |  ||  | |   | |  |||  || | ||   |||     || |  || |  | | |        |||||| ||  ||||||| || |||||  | |||||  ||||||| |||||||| || |||||||| |||||||||||||| || || || ||| | || |||
---------------------gtaatttatttataatgtctgaagatgtttgtctaatgcattgcattaaaattttgtatatgttatct--------cagGTTGGGGAATATGATGACTAATGAAACAGGTGACTTGCGTTCAGCTGGGGTGGTACAAGTTCTTGATGTTGGCTGTGGAGTTGCGAGCTTTGCGGCTTAT

upper sequence: GLYMA0024S00260.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g05750.t01 (Vitis vinifera), 3'ss of exon 2
ttgaactttttctatgtagtgggtgctcttgtggaaaattttctgttaattgaatagttcaaga-catagttgttat-ccatttaa--ttttttatgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGTAGTTCAAGTTCTGGATGTTGGCTGTGGTGTGGCCAGTTTTTCAGCATAT
 |  | |  ||||  ||| |  |   ||   |||    ||||||   || | |||  |     | ||   ||||||     |  ||  ||| || |||||||||||||||| ||||||  ||||||||  | |||||||| || || || |||||| |||||||||| |||||||| ||||| || ||||| || ||||| |||
-tctattagttct--gtaataag-attccgttggctttttttctcaaaaataaatgttagggaatcacttttgttaaattgtccaaactttattgtgaatgcagGTTAGGAAATATGACAACCAATGAAACCGGTGATCTACGATCCGCAGGGGTATTTCAAGTTCTAGATGTTGGTTGTGGAGTTGCCAGCTTCTCAGCTTAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935654|gb|BQ080531.1|BQ080531
EST:     CCTGGTGGTGGTACCCATTTCAAGCATGGGGCTTCTGATTACATAGAGAG                         GTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGT
genomic: CCTGGTGGTGGTACCCATTTCAAGCATGGGGCTTCTGATTACATAGAGAGgtagctgcta ... atgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgaatagttcaagacatagttgttatccatttaattttttatgaatgcagGTTAGGACATATGATTACCAATGAGGCTGGTGATCTGCGTTCTGCTGGGGTAGTTCAAGTTCTGGATGTTGGCTGTGGTGTGGCCAGTTTTTCAGCATAT
                                       ttttttat  CT-rich tract
                    atagttgttatccatt  TA-rich tract