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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAAAAGGAAATCATGGAGATTGCATCAAACAAAGCACTTTCTTTAGCCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAGgcaagtacagatcacaatccatgtctatatatgcaaattttaaatattcctcttttcagtttcatggtagcaaagttaattgattctaccaaaaggtcta...

Basic information

species Glycine max
transcript GLYMA0022S00480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0022S00480.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0010g00610.t01 (Vitis vinifera), 5'ss of exon 4
GAAGGAAAAGGAAATCATGGAGATTGCATCAAACAAAGCACTTTCTTTAGCCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAGgcaagtacagatcacaatccatgtctatatatgcaaattttaaatattcctcttttcagtttcatggtagcaaagttaattgattctaccaaaaggtcta-
    || || || |||| |||||  || || |||||||||||    ||||| || |||||||| | |||||||||||||||||| |||||| ||   ||||||||| ||  |    |  ||  |   ||   |     ||   ||||     ||||  |  |  |||| ||  | |  |     | |      |  | || 
----GAGAAAGAGATCACGGAGACAGCCTCCAACAAAGCACTCATGTTAGCGGAGAGCAGAGTGAGGTGCATAGTAGACAATGCAAAATGCATACAAAAGGCAAgt-caatttgagaaacaaatacgta---gtcttcttcccatatattaattttgggcct--tggttgcttattgtaccacattttgacgcacatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21887878|gb|BQ741091.1|BQ741091
EST:     CCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAG                         ATTGTAAAAGAATGTGGATCATTCAGTAGTTACATATGGGGTTATGTGAAT
genomic: CCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAGgcaagtacag ... ttatgcacagATTGTAAAAGAATGTGGATCATTCAGTAGTTACATATGGGGTTATGTGAAT
EST: gi|151396222|gb|EV266099.1|EV266099
EST:     CCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAG                         ATTGTAAAAGAGTGTGGATCATTCAGTAGTTACATATGGGGGTTATGTGAA
genomic: CCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAGgcaagtacag ... ttatgcacagATTGTAAAAGAATGTGGATCATTCAGTAGTTACATATGGGG-TTATGTGAA
EST: gi|192298919|gb|FG987664.1|FG987664
EST:     CCGATGGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAG                         ATTGTAAAAGAATGTGGATCATTCAGTAGTTACATATGGGGGTTATGTGAA
genomic: CCGATAGCAGAGTTATGTGCATAGTAGACAATGCCAAATGCGTAATGAAGgcaagtacag ... ttatgcacagATTGTAAAAGAATGTGGATCATTCAGTAGTTACATATGGGG-TTATGTGAA