1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGTTGTACAAAAGAGTTCTCATGGATAGGGTTGCCATGGACGTGTAAGAAAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCgtgagtcttgtttttcatttacccttttcattgagttcttttttttggttggccacacatcatttgtagtctgactctggggattttgttgttgttgcgattttaaatgttttcag
species | Glycine max |
transcript | GLYMA0022S00420.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCC GTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCCEST: gi|193547918|gb|FK504751.1|FK504751
genomic: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCgtgagtcttg ... atgttttcagGTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCC
EST: CACTATCAGGCATATAAAAAGAAAATGGTTTTCAGATATCC GTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCCEST: gi|193497569|gb|FK460801.1|FK460801
genomic: CACTATCAGGCATAT-AAAAG-AAATGGTTTTCAGATATCCgtgagtcttg ... atgttttcagGTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCC
EST: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCC GTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCCEST: gi|13311628|gb|BG405279.1|BG405279
genomic: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCgtgagtcttg ... atgttttcagGTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCC
EST: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCC GTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCC
genomic: AAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCgtgagtcttg ... atgttttcagGTGCATGATTTTGTATTTGTTCTGGCAGAAGAGGACAAGCGTTTAGTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTTGTACAAAAGAGTTCTCATGGATAGGGTTGCCATGGACGTGTAAGAAAAGAAGAAAGCACTATCAGGCATATAAAAGAAATGGTTTTCAGATATCCgtgagtcttgtttttcatttacccttttcattgagttcttttttttggttggccacacatcatttgtagtctgactctggggattttgttgttgttgcgattttaaatgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA