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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGGGCAAAACGAAGTCTTCTGACAGCCGGAGCTCAAGTGCCTACGCGAGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcgttgtgggctccaagcggtccgcaagcatgtttcaactgcgctaggcattgcctattgactctgccggcaccggaacacttcacagtcagg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP10049
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6548453|gb|AV394237.1|AV394237
EST:     AGCAGGCACCATGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG                         GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACAAGGA
genomic: AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
EST: gi|10789781|gb|AV627146.1|AV627146
EST:     GGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG                         GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
genomic: GGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
EST: gi|15910557|gb|BI816406.1|BI816406
EST:     AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG                         GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
genomic: AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTGGGCAAAACGAAGTCTTCTGACAGCCGGAGCTCAAGTGCCTACGCGAGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcgttgtgggctccaagcggtccgcaagcatgtttcaactgcgctaggcattgcctattgactctgccggcaccggaacacttcacagtcagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacactt