1 5' 3' | 2 5' 3' |
...tgcgccagcgcacacagcccaagtgctcgcgtttttgacatgcaagcctttgttgacgtcagattgacacggttatgctgggttttcgcactatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGCGTGCTTTCTGGAGGAGGTCATCAAGTACATCGAGGCGCTGAAGGCGCGC
species | Chlamydomonas reinhardtii |
transcript | EDP10049 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGGCACCATGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACAAGGAEST: gi|10789781|gb|AV627146.1|AV627146
genomic: AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
EST: GGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGCEST: gi|15910557|gb|BI816406.1|BI816406
genomic: GGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
EST: AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAG GCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
genomic: AGCAGGCACCAAGCGGCTGAGCAACGCCGCCGAACTCGAATCAATGAGAGgtaagctgcg ... ctatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGC
gcctttgttgacgtcagattgacacggttatgctgggttttcgcactatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGCGTGCTTTCTGGAGGAGGTCATCAAGTACATCGAGGCGCTGAAGGCGCGC
gattgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcgccagcgcacacagcccaagtgctcgcgtttttgacatgcaagcctttgttgacgtcagattgacacggttatgctgggttttcgcactatgtgcagGCTGGAGCTCCTGCGCAAGCTGGTGCCGCATGCGGAGCGCGCCAACACGGCGTGCTTTCTGGAGGAGGTCATCAAGTACATCGAGGCGCTGAAGGCGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - -gcacaca
- - - - - - - - - - - - - - - gtttttg
- - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt