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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgcatggtgcaccaactgcatcccagctctccactgccctcaatactcacgtgctcaccccgccgcccccctccatgcctgcctccgtacacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATGCTGCCCACCCTGGCGCTGATCCAGAACGAGAAGACGGTGGACTACGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP09856
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15373500|gb|BI532926.1|BI532926
EST:     AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAG                         CTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
genomic: AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAGgtgaggaagg ... acacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
EST: gi|8576773|gb|BE129410.1|BE129410
EST:     AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAG                         CTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
genomic: AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAGgtgaggaagg ... acacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
EST: gi|10786251|gb|AV642923.1|AV642923
EST:     AGCATCTATCAATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAG                         CTGAACGCGGAGAAG
genomic: AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAGgtgaggaagg ... acacacgcagCTGAACGCGGAGAAG
EST: gi|15373310|gb|BI532736.1|BI532736
EST:     AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAG                         CTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
genomic: AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAGgtgaggaagg ... acacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
EST: gi|15370509|gb|BI529935.1|BI529935
EST:     AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAG                         CTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG
genomic: AGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGTTTGTCAAGgtgaggaagg ... acacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctgcatggtgcaccaactgcatcccagctctccactgccctcaatactcacgtgctcaccccgccgcccccctccatgcctgcctccgtacacacgcagCTGAACGCGGAGAAGGCGCCCTTCCTGACGGACCGGTTAAAGATCTGGATGCTGCCCACCCTGGCGCTGATCCAGAACGAGAAGACGGTGGACTACGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-ctgcatg
- - - - - - accaact
- - - - - - - - - - - - - - - - - - - - - - atactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcctg