1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGTACAACGAGATTCATTCGGAGCAGGACTTCTTCAAGGAGATGAAGGGAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttgccccgcgtcctccgccacgggactactgcgccacctccctcccatgccccggttcagccgagagtcttctaacgcccgcataacattcctcacctcag
species | Chlamydomonas reinhardtii |
transcript | EDP09856 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAG GTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGEST: gi|8576773|gb|BE129410.1|BE129410
genomic: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttg ... ctcacctcagGTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
EST: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAG GTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGEST: gi|10786251|gb|AV642923.1|AV642923
genomic: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttg ... ctcacctcagGTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
EST: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAG GTCATGGACAAGCATCTATCAATTCTGTGCAAGAAGCACTTGGAAACCAAGEST: gi|15373310|gb|BI532736.1|BI532736
genomic: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttg ... ctcacctcagGTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
EST: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAG GTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAGEST: gi|15370509|gb|BI529935.1|BI529935
genomic: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttg ... ctcacctcagGTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
EST: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAG GTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
genomic: GAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttg ... ctcacctcagGTCATGGACAAGCATCTATCGATTCTGTGCAAGAAGCACTTGGAAACCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTACAACGAGATTCATTCGGAGCAGGACTTCTTCAAGGAGATGAAGGGAGAGGAGCGCATGATTTGCCACTTCTATCGCGAGAACTGGCCGTGCAAGgtgggttttgccccgcgtcctccgccacgggactactgcgccacctccctcccatgccccggttcagccgagagtcttctaacgcccgcataacattcctcacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG