1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACCGCATGGTAGACGTGCTGGTCACCACGGCGGGCGGCATCGAGGAGGACTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgccactgcacttggggaagggaaacatacaccacgcccttgggaggaggaaggggcagaatgcgaagcatctgacttgccttggggtttacctcttgctctacttttccctcggttttgttgggtgatttgccgtatacgacaactttcgcgtgtggcccctggccccaccgccctcag
species | Chlamydomonas reinhardtii |
transcript | EDP09680 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGG GCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCG-CAACAEST: gi|9458518|gb|BE452279.1|BE452279
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACA
EST: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGG GCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGCEST: gi|6541624|gb|AV387408.1|AV387408
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
EST: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAGCTCAAGG GCTCGGAGCTGCGTATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCGCATGGTAGACGTGCTGGTCACCACGGCGGGCGGCATCGAGGAGGACTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgccactgcacttggggaagggaaacatacaccacgcccttgggaggaggaaggggcagaatgcgaagcatctgacttgccttggggtttacctcttgctctacttttccctcggttttgttgggtgatttgccgtatacgacaactttcgcgtgtggcccctggccccaccgccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA