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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgccactgcacttggggaagggaaacatacaccacgcccttgggaggaggaaggggcagaatgcgaagcatctgacttgccttggggtttacctcttgctctacttttccctcggttttgttgggtgatttgccgtatacgacaactttcgcgtgtggcccctggccccaccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGCCCAACTCCAACTACTGCAAGTTCGAGGACTGGATCATCCCCATCCTGGA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09680
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15693900|gb|BI718205.1|BI718205
EST:     CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGG                         GCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCG-CAACA
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACA
EST: gi|9458518|gb|BE452279.1|BE452279
EST:     CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGG                         GCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
EST: gi|6541624|gb|AV387408.1|AV387408
EST:     CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAGCTCAAGG                         GCTCGGAGCTGCGTATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC
genomic: CTTCATCAAGTGCATGGGGCACACCTATCTAGGAGACTTCCAACTCAAGGgtgagcgcca ... ccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttgccgtatacgacaactttcgcgtgtggcccctggccccaccgccctcagGCTCGGAGCTGCGCATGAAGGGCCTGAACCGCATCGGCAACATGGTGGTGCCCAACTCCAACTACTGCAAGTTCGAGGACTGGATCATCCCCATCCTGGA
                                             ccgccctc  CT-rich tract