1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctggcttcatcatcacccccacccccacccggtcatgaactccacgcgcacacgcactcaccgtgacggctctctaccgcctcgtgtctttctgacgcagGTGGTCCGCAGGCGATGTGCTTCGGCTGCGCCTCCTTCGGCGCCTTCAGCTACGTCATCGAGAAGTACCTGAACTCAGACCACTGA
species | Chlamydomonas reinhardtii |
transcript | EDP09249 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACCCCGTCATTGCGGGCTGCGTCACGGNGGCCATGATGGCGCACAGTG GTGGTCCGCAGGCGATGTGCTTCGGEST: gi|22065258|gb|BQ816273.1|BQ816273
genomic: CAACCCCGTCATTGCGGGCTGCGTCACGGGGGCCATGATGGCGCACAGTGgtgcgtggag ... tctgacgcagGTGGTCCGCAGGCGATGTGCTTCGG
EST: CAACCCCGTCATTGCGGGCTGCGTCACGGGGGCCATGATGGCGCACAGTG GTGGTCCGCAGGCGATGTGCTTCGGCTGCGCCTCCTTCGGCGCCTTCAGCT
genomic: CAACCCCGTCATTGCGGGCTGCGTCACGGGGGCCATGATGGCGCACAGTGgtgcgtggag ... tctgacgcagGTGGTCCGCAGGCGATGTGCTTCGGCTGCGCCTCCTTCGGCGCCTTCAGCT
gcgcacacgcactcaccgtgacggctctctaccgcctcgtgtctttctgacgcagGTGGTCCGCAGGCGATGTGCTTCGGCTGCGCCTCCTTCGGCGCCTTCAGCTACGTCATCGAGAAGTACCTGAACTCAGACCACTGA
ttctgac putative branch site (score: 2)
cctcgtgtctttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggcttcatcatcacccccacccccacccggtcatgaactccacgcgcacacgcactcaccgtgacggctctctaccgcctcgtgtctttctgacgcagGTGGTCCGCAGGCGATGTGCTTCGGCTGCGCCTCCTTCGGCGCCTTCAGCTACGTCATCGAGAAGTACCTGAACTCAGACCACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - -caccccc
- - - - - - - accccca
- - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - cacgcgc
- - - - - - - - - - - - - - - - - - - - - - - - -acacgca