1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcctgtccttgccgcacccacgcgccgacccacatcaaccacaccggctgtccccacgtgtcgacacgcacacgcacacacatgtgatacattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTGCTCAAAGAGATGTTCACAAACATGAGGACCAAGAGTGT
species | Chlamydomonas reinhardtii |
transcript | EDP09249 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGG GGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTGEST: gi|22065258|gb|BQ816273.1|BQ816273
genomic: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGGgtgggttgcc ... cattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTG
EST: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGG GGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTGEST: gi|22068978|gb|BQ818698.1|BQ818698
genomic: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGGgtgggttgcc ... cattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTG
EST: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGG GGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTG
genomic: CGGGACTCGCGTTCGGCCTCTTCATGTCGTCCTTCGAGAACGCGCACGGGgtgggttgcc ... cattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTG
cggctgtccccacgtgtcgacacgcacacgcacacacatgtgatacattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTGCTCAAAGAGATGTTCACAAACATGAGGACCAAGAGTGT
atacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctgtccttgccgcacccacgcgccgacccacatcaaccacaccggctgtccccacgtgtcgacacgcacacgcacacacatgtgatacattacacagGGCATGGACTCGATACCCGACGGGACGGCCCAGCGGTCCACGCGTGCCGTGCTCAAAGAGATGTTCACAAACATGAGGACCAAGAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tgcctgt
- - - - - - - -cacccac
- - - - - - - - - - - - - - acccaca
- - - - - - - - - - - - - - - - - - -aaccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgata