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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCCGGCCCCGAGGGCGTGCGCGGCCGCAACAGCGACAACAAGCTCATCCTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgggcgtgggcgtgctttttgaaggggttgcggttgcggttggttgggaacgggggctgcgctggggatggcgtgttgaggccgacggggagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09235
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808535|gb|FC097867.1|FC097867
EST:     CTGGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGG
EST: gi|14237971|gb|BG856787.1|BG856787
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGTGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|49458282|gb|BP086195.1|BP086195
EST:     CTGGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTGAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|16435364|gb|BM000584.1|BM000584
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|161823421|gb|FC105743.1|FC105743
EST:     CTGGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAG
EST: gi|34982828|gb|CF556745.1|CF556745
EST:     AAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: AAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|23362199|gb|BU650019.1|BU650019
EST:     CGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14240899|gb|BG859715.1|BG859715
EST:     CTCAAAAAACTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|16438394|gb|BM003614.1|BM003614
EST:     GACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: GACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14227779|gb|BG846595.1|BG846595
EST:     CTCCAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14224909|gb|BG843725.1|BG843725
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATTCGGAAAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14239203|gb|BG858019.1|BG858019
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14238172|gb|BG856988.1|BG856988
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|161807720|gb|FC096454.1|FC096454
EST:     CTGGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGG
EST: gi|14230349|gb|BG849165.1|BG849165
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|34982827|gb|CF556744.1|CF556744
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14237814|gb|BG856630.1|BG856630
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
EST: gi|14241066|gb|BG859882.1|BG859882
EST:     CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAA                         GCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG
genomic: CTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgg ... cgtgccgcagGCGCACCTACGAGTGGATCAAGGGGCAGCTGGATGCGGAGAAGGAGAAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCCGGCCCCGAGGGCGTGCGCGGCCGCAACAGCGACAACAAGCTCATCCTCGAGAAGCTGGGCTGGGAGCCCACCGTGACGCTCGCGGACGGCCTCAAgtgggtgtgggcgtgggcgtgctttttgaaggggttgcggttgcggttggttgggaacgggggctgcgctggggatggcgtgttgaggccgacggggagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcgtgt