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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCGGGCGGCTTCATTGCCAGCCACCTGGCCAAGCGTCTCAAGTCTGAGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaagtttgttgatgatctggtgggggtggtctaaatcgcctttgcgtgagacgaagcataatcgcacatgtaatagacaattgtgtagactttg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09235
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161816708|gb|FC102923.1|FC102923
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14239204|gb|BG858020.1|BG858020
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14228408|gb|BG847224.1|BG847224
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161811869|gb|FC099166.1|FC099166
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|49459685|gb|BP087598.1|BP087598
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|10791023|gb|AV628389.1|AV628389
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|49463261|gb|BP091174.1|BP091174
EST:     CGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: CGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|15367856|gb|BI527282.1|BI527282
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|34982977|gb|CF556894.1|CF556894
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|34980878|gb|CF554866.1|CF554866
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|6544510|gb|AV390294.1|AV390294
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14238173|gb|BG856989.1|BG856989
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14227781|gb|BG846597.1|BG846597
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|49458428|gb|BP086341.1|BP086341
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|6547466|gb|AV393250.1|AV393250
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14237815|gb|BG856631.1|BG856631
EST:     GNGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: G-GGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161819144|gb|FC110442.1|FC110442
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|23362200|gb|BU650020.1|BU650020
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|34980880|gb|CF554867.1|CF554867
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|8514333|gb|BE122228.1|BE122228
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|14230350|gb|BG849166.1|BG849166
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161791540|gb|FC078916.1|FC078916
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|15702608|gb|BI726913.1|BI726913
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161821351|gb|FC109490.1|FC109490
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|15702804|gb|BI727109.1|BI727109
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161792289|gb|FC080347.1|FC080347
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|161792216|gb|FC079819.1|FC079819
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
EST: gi|49469894|gb|BP097755.1|BP097755
EST:     AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCG                         GAGGAGGAGTTCTGCCATGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC
genomic: AGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaag ... gcattcgcagGAGGAGGAGTTCTGCCACGAGTTCCACCTGGTGGACCTGCGCGTGTACGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCGGGCGGCTTCATTGCCAGCCACCTGGCCAAGCGTCTCAAGTCTGAGGGTCACTACATCGTGGCTTGCGACTGGAAGCGCAATGAGCACTTCGCGgtgagctaagtttgttgatgatctggtgggggtggtctaaatcgcctttgcgtgagacgaagcataatcgcacatgtaatagacaattgtgtagactttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtag