1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgaatgtgactccccccctgtaggtagcgggttggtaagggtttactatcgtgttgaaatggactaacccctacccgtgaccccctccgcactccgcagGCGTGGTGCTGGTGGCTGTGGGGCGGGACGAGGAGGCGGCCTTCTGGCTGCTGGCGGCGCTGGTGGAGCGCATCTGCTTTCCCGGCTCCTTCGGACACAC
species | Chlamydomonas reinhardtii |
transcript | EDP08081 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCACAACGCTAACGTCGGCTACTGCCAGGGCCTCAACTTCACAGTGG NEST: gi|14240654|gb|BG859470.1|BG859470
genomic: GTCCACAACGCTAACGTCGGCTACTGCCAGGGCCTCAACTTCACAGTGGgtgagtcatg ... cactccgcag-
EST: GTCCACAACGCTAACGTCGGCTACTGCCAGGGCCTCAACTTCACAGTGG N
genomic: GTCCACAACGCTAACGTCGGCTACTGCCAGGGCCTCAACTTCACAGTGGgtgagtcatg ... cactccgcag-
actatcgtgttgaaatggactaacccctacccgtgaccccctccgcactccgcagGCGTGGTGCTGGTGGCTGTGGGGCGGGACGAGGAGGCGGCCTTCTGGCTGCTGGCGGCGCTGGTGGAGCGCATCTGCTTTCCCGGCTCCTTCGGACACAC
gactaac putative branch site (score: 1)
ccccctccgcactcc putative PPT
ttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaatgtgactccccccctgtaggtagcgggttggtaagggtttactatcgtgttgaaatggactaacccctacccgtgaccccctccgcactccgcagGCGTGGTGCTGGTGGCTGTGGGGCGGGACGAGGAGGCGGCCTTCTGGCTGCTGGCGGCGCTGGTGGAGCGCATCTGCTTTCCCGGCTCCTTCGGACACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
-tgaatgt
- - - - - - - - - -tgtaggt
- - - - - - - - - - - - - - - - - - - - - - - - -tcgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaacc