1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gaggtgagcgggggggcagcccgaagctgggtcaagaagcggggcacaacgagtgggggctgttggagaagctggtgcttgcagggcaggagcttggaaccagcgtctcagcgacaaacgtagcatggagcagggtttctatacatccttgtgaatccataatctactcgctccctggcatCAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCGGAGGACCGAGTGCTCGGCTTCTTCACGCTGGGGCGAGCGGAGCGGGAGC
species | Chlamydomonas reinhardtii |
transcript | EDP08053 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGGACCAGCTGGCAG GAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCGEST: gi|16432596|gb|BI997822.1|BI997822
genomic: TATTGGACCAGCTGGCAGgaggtgagcg ... tccctggcatCAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCG
EST: GGCTCATGTCCACATCGCTGGGTCTGGCGGCCTATTGGACCAGCTGGCAG GAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCG
genomic: GGCTCATGTCCACATCGCTGGGTCTGGCGGCCTATTGGACCAGCTGGCAGgaggtgagcg ... tccctggcatCAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCG
ggagcagggtttctatacatccttgtgaatccataatctactcgctccctggcatCAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCGGAGGACCGAGTGCTCGGCTTCTTCACGCTGGGGCGAGCGGAGCGGGAGC
tctactcgctccct CT-rich tract
tttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggtgagcgggggggcagcccgaagctgggtcaagaagcggggcacaacgagtgggggctgttggagaagctggtgcttgcagggcaggagcttggaaccagcgtctcagcgacaaacgtagcatggagcagggtttctatacatccttgtgaatccataatctactcgctccctggcatCAGGTTGCTCGCGAAGCCCCCGAGATGAAGACCCTGCTGGGCCTGGCGCCGGAGGACCGAGTGCTCGGCTTCTTCACGCTGGGGCGAGCGGAGCGGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA