1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttgggctgccttcgtggcttcccaatcatctccgcgcagacaattgggtttcagctatcgcatgtacacacgtgcccctttgccctgtgcgttgccagGTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGAGCTGACGATGGAGCTCTGCCGCACGCGGCTGCCGGTGGAGAAGGCCGAGAAGACGCTG
species | Chlamydomonas reinhardtii |
transcript | EDP08053 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGCCAACTGGGCACCCACGCACGGCCAAACCGAGCCCTGGCG GTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGAEST: gi|16432596|gb|BI997822.1|BI997822
genomic: GCCGCCAACTGGGCACCCACGCACGGCCAAACCGAGCCCTGGCGgtgaggtgtc ... gcgttgccagGTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGA
EST: GCCGCCAACTGGGCACCCACGCACGGCCAAACCGAGCCCTGGCG GTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGAGCTGACGAT
genomic: GCCGCCAACTGGGCACCCACGCACGGCCAAACCGAGCCCTGGCGgtgaggtgtc ... gcgttgccagGTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGAGCTGACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgggctgccttcgtggcttcccaatcatctccgcgcagacaattgggtttcagctatcgcatgtacacacgtgcccctttgccctgtgcgttgccagGTTCGTGGTGCTGGAGGGGGCGTCCAAGAAGGAGATGGAAGAGCTGACGATGGAGCTCTGCCGCACGCGGCTGCCGGTGGAGAAGGCCGAGAAGACGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- ttgggct
- - - - - - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - - - -agacaat
- - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg