1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...gttccttggcgctgcttgtggccaagtggctcgcgctgtcttgccgcatcccgtttgcatgcactgccctacctctgatccctccctgtccttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCCGGTGTGAACCGCAAGGCACTGGACCAGTACGTGGACTTCTCCAACCAGC
species | Chlamydomonas reinhardtii |
transcript | EDP07771 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CACTGCCGCAGGAGGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAG GACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCCEST: gi|15699453|gb|BI723758.1|BI723758
genomic: CACTGCCGCAGGAGGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAGgtgcgtgaag ... cttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCC
EST: ACTGCCGCAGGAGGGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAG GACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCCEST: gi|15699452|gb|BI723757.1|BI723757
genomic: ACTGCCGCAGGA-GGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAGgtgcgtgaag ... cttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCC
EST: CACTGCCGCAGGAGGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAG GACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCC
genomic: CACTGCCGCAGGAGGCGTTCGACAAGCCCTACCGAGACCGCAGCATCAAGgtgcgtgaag ... cttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCC
gcatcccgtttgcatgcactgccctacctctgatccctccctgtccttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCCGGTGTGAACCGCAAGGCACTGGACCAGTACGTGGACTTCTCCAACCAGC
ctctgat putative branch site (score: 4)
ccctacctctgatccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccttggcgctgcttgtggccaagtggctcgcgctgtcttgccgcatcccgtttgcatgcactgccctacctctgatccctccctgtccttgccacagGACCTGATGCGGGCGTTGGAGGAAGTGAATGCCGGCCTGCAGCGCTTTGCCGGTGTGAACCGCAAGGCACTGGACCAGTACGTGGACTTCTCCAACCAGC
- - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgca