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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAAGCGCATGGCCCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGGgtgagtgtcgctccggggtggttggggcttaaacatcacaactcctgggcgcggatggcaagtccatcgccgccgccaacctgggtgagtgttgccacgcggggtcgccgcgcaggcccctgtgccgagagagtatgtgcgcacgaggatgacaggcgtcctgcattattgcgtgtgcaaatgttacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06571
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462662|gb|BP090575.1|BP090575
EST:     CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGG                         GGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAGGTCCA
genomic: CCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGGgtgagtgtcg ... aatgttacagGGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAAGTCCA
EST: gi|10774753|gb|AV625576.1|AV625576
EST:     CCAG-AGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGG                         GGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAGGTCCATTG
genomic: CCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGGgtgagtgtcg ... aatgttacagGGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAAGTCCATTG
EST: gi|10779000|gb|AV635680.1|AV635680
EST:     CCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGG                         GGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAGGTCCATTG
genomic: CCAGGAGGGCTACGACGCGGACGGCAAGTCCATTGCGGCGGCGGCTATGGgtgagtgtcg ... aatgttacagGGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAAGTCCATTG