1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacacgttagcgtttacttcgctggcttgttagttgaagcctccgcttttgaaacacactccgtgtggcatgcatcggccttgttacccttgccttgcagATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCATCCCCTACGGCAAACTGACAGTGCCGCAGATCCTGTTGGGCGTATCCCA
species | Chlamydomonas reinhardtii |
transcript | EDP06532 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAAGGCGTCAG ATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCAEST: gi|10790143|gb|AV627509.1|AV627509
genomic: GCTCAAGGCGTCAGgtgcgtgcgc ... tgccttgcagATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCA
EST: CACAGTAATGGCGCCGGAGGTCATCATGGGCCGCTGGCTCAAGGCGTCAG ATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCA
genomic: CACAGTAATGGCGCCGGAGGTCATCATGGGCCGCTGGCTCAAGGCGTCAGgtgcgtgcgc ... tgccttgcagATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCA
cttttgaaacacactccgtgtggcatgcatcggccttgttacccttgccttgcagATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCATCCCCTACGGCAAACTGACAGTGCCGCAGATCCTGTTGGGCGTATCCCA
cccttgcctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacgttagcgtttacttcgctggcttgttagttgaagcctccgcttttgaaacacactccgtgtggcatgcatcggccttgttacccttgccttgcagATGTGTTCAGCTTCGGCATGCTGCTGTGGCAGCTCGTCACAAGCGAGCCCATCCCCTACGGCAAACTGACAGTGCCGCAGATCCTGTTGGGCGTATCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
cacacgt
- - - - - - - - - - - - - -tgttagt
- - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca