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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgcatgcggcagcaggtggcctcgcggcttaagaatagagtgcgcacatcccgtacgtgcctctgcggtgcggaaccaatattgtatgtgtcgggcccatttcacaaaagcaaatccggtgtgtgtatatgtgtatgtgactgtgtgtgtccgcgcatacagGTGACTCAGGGCGACAAGCCGCTGGAGAGCCACCACTGGAGCACCGTCACAGTAATGGCGCCGGAGGTCATCATGGGCCGCTGGCTCAAGGCGTCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06532
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10790143|gb|AV627509.1|AV627509
EST:     GCGACCGCCGCGGCTTCGTGGCGATGGTGGCGGACTTTGGTCTGAGCAAG                         GTGACTCAGGGCGACAAGCCGCTGGAGAGCCACCACTGGAGCACCGTCACA
genomic: GCGACCGCCGCGGCTTCGTGGCGATGGTGGCGGACTTTGGTCTGAGCAAGgtgcgtgcgc ... gcgcatacagGTGACTCAGGGCGACAAGCCGCTGGAGAGCCACCACTGGAGCACCGTCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaaatccggtgtgtgtatatgtgtatgtgactgtgtgtgtccgcgcatacagGTGACTCAGGGCGACAAGCCGCTGGAGAGCCACCACTGGAGCACCGTCACAGTAATGGCGCCGGAGGTCATCATGGGCCGCTGGCTCAAGGCGTCAG
                tgtatat  TA-rich tract