1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaacctgcgcattccgcgggtgctgagtcggaatgctcccaacggttgtgtggatgtggcgtgcttatgcttatcatgcttatacgtatgcgcctgcagGTGCGGCTTCTGTGCCGAGCCCATCAGCTCGGGCCGCGGCGCCTTCTCCTACCAGATGCACCCCGGCGACCCGCGCCCCTACCACACCGACTGCTACAAG
species | Chlamydomonas reinhardtii |
transcript | EDP06520 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCATGAACCGCAAATGGCACCCGGACTGTTTCAA GTGCGGCTTCTGTGCCGAGCCCATCAGCTCGGGCCGCGGCGCCTTCTCCTAEST: gi|22066002|gb|BQ816693.1|BQ816693
genomic: GGCATGAACCGCAAATGGCACCCGGACTGTTTCAAgtgagtgtcg ... gcgcctgcagGTGCGGCTTCTGTGCCGAGCCCATCAGCTCGGGCCGCGGCGCCTTCTCCTA
EST: AGCGGCTACGTGACCGGCATGAACCGCAAATGGCACCCGGACTGTTTCAA GTGCGGCTTCTGTGCCGAGCCCATCAGC
genomic: AGCGGCTACGTGACCGGCATGAACCGCAAATGGCACCCGGACTGTTTCAAgtgagtgtcg ... gcgcctgcagGTGCGGCTTCTGTGCCGAGCCCATCAGC
gttgtgtggatgtggcgtgcttatgcttatcatgcttatacgtatgcgcctgcagGTGCGGCTTCTGTGCCGAGCCCATCAGCTCGGGCCGCGGCGCCTTCTCCTACCAGATGCACCCCGGCGACCCGCGCCCCTACCACACCGACTGCTACAAG
ttatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacctgcgcattccgcgggtgctgagtcggaatgctcccaacggttgtgtggatgtggcgtgcttatgcttatcatgcttatacgtatgcgcctgcagGTGCGGCTTCTGTGCCGAGCCCATCAGCTCGGGCCGCGGCGCCTTCTCCTACCAGATGCACCCCGGCGACCCGCGCCCCTACCACACCGACTGCTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
caaacct
- - - - - - - - - - - - - - - - - - ctcccaa
- - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacgta