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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgctgcttctgttacagcaattttcttgcgggacggaatccaagcagctgtatacccaagctttttgaggctttcacccggaaatccattcctggccttgtcggggaaggcgcgaagaagaaatgtggcttaccttgcgccgttgtttcccatgctcctgcctcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACCATCCCCCTGACCTGCCTGTGGCCCGGCAGCCAGTAAGCCGCTTCCCCAG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06509
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794925|gb|FC081124.1|FC081124
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10781101|gb|AV637781.1|AV637781
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGNGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|14232389|gb|BG851205.1|BG851205
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTTCGTGGATGTTCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|14235762|gb|BG854578.1|BG854578
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10772064|gb|AV622887.1|AV622887
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGTGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|14239140|gb|BG857956.1|BG857956
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|7616196|gb|AW721636.1|AW721636
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10780696|gb|AV637376.1|AV637376
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGA
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGA
EST: gi|10191298|gb|BE761374.1|BE761374
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTTGGATGTCCAGNGCCTGAC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGT-GGATGTCCAGGGCCTGAC
EST: gi|10779553|gb|AV636233.1|AV636233
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161815613|gb|FC101806.1|FC101806
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|15694359|gb|BI718664.1|BI718664
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161794205|gb|FC081639.1|FC081639
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161816715|gb|FC102930.1|FC102930
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10769948|gb|AV620773.1|AV620773
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGCATGTCCAGG-CCTGAN
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGG-ATGTCCAGGGCCTGAC
EST: gi|22074644|gb|BQ823555.1|BQ823555
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161810224|gb|FC098184.1|FC098184
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161813949|gb|FC104562.1|FC104562
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10775362|gb|AV632042.1|AV632042
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161804898|gb|FC089187.1|FC089187
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|161804532|gb|FC088847.1|FC088847
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACCTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|10780265|gb|AV636945.1|AV636945
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCG
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCG
EST: gi|7687795|gb|AW758441.1|AW758441
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGT
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGT
EST: gi|16073198|gb|BI875194.1|BI875194
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
EST: gi|14240266|gb|BG859082.1|BG859082
EST:     CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAG                         AACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC
genomic: CCGCCCTGTCGGCCCACCTGTCGAACCCCTTCGGCAACAACATCCTGAAGgtgcgctgct ... tcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaatgtggcttaccttgcgccgttgtttcccatgctcctgcctcccccgcagAACATCGGCACTTGCACCGTGCCCCACTCCGTGGATGTCCAGGGCCTGACCATCCCCCTGACCTGCCTGTGGCCCGGCAGCCAGTAAGCCGCTTCCCCAG
         ggcttac  putative branch site (score: 3)
                            tttcccatgctcctgc  putative PPT