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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtaggacgggttggacgggttggagagatgggctgtgtatggcgtgccgctcggcgttgtgtgtgtgtggcagaacatgcaagctcatcacacagagcgccatggctccagaactgactgcgcgctttgctttcccttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06509
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161794925|gb|FC081124.1|FC081124
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10781101|gb|AV637781.1|AV637781
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|14232389|gb|BG851205.1|BG851205
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|14235762|gb|BG854578.1|BG854578
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|16071953|gb|BI873949.1|BI873949
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: -GAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|49462222|gb|BP090135.1|BP090135
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7686921|gb|AW757569.1|AW757569
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|49465264|gb|BP093177.1|BP093177
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|22056453|gb|BQ812340.1|BQ812340
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10772064|gb|AV622887.1|AV622887
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|14239140|gb|BG857956.1|BG857956
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10780696|gb|AV637376.1|AV637376
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7413174|gb|AW651928.1|AW651928
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7427270|gb|AW661436.1|AW661436
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAAC
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAAC
EST: gi|14237491|gb|BG856307.1|BG856307
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10191298|gb|BE761374.1|BE761374
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7687830|gb|AW758476.1|AW758476
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACA
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACA
EST: gi|6547139|gb|AV392923.1|AV392923
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAGCGAGG                         ACCCCATCTTCA
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCA
EST: gi|161815613|gb|FC101806.1|FC101806
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|49468797|gb|BP096658.1|BP096658
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|34992602|gb|CF566519.1|CF566519
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAA
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAA
EST: gi|14237986|gb|BG856802.1|BG856802
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|161794205|gb|FC081639.1|FC081639
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|161816715|gb|FC102930.1|FC102930
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10769948|gb|AV620773.1|AV620773
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|6551751|gb|AV397535.1|AV397535
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|22074644|gb|BQ823555.1|BQ823555
EST:     GGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: GGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|161810224|gb|FC098184.1|FC098184
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|14229151|gb|BG847967.1|BG847967
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|161813949|gb|FC104562.1|FC104562
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|6544286|gb|AV390070.1|AV390070
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAANCCGGAGATGGGC
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGC
EST: gi|10775362|gb|AV632042.1|AV632042
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|161804898|gb|FC089187.1|FC089187
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10778438|gb|AV635118.1|AV635118
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGT
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGT
EST: gi|161804532|gb|FC088847.1|FC088847
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|10780265|gb|AV636945.1|AV636945
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7687795|gb|AW758441.1|AW758441
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|16073198|gb|BI875194.1|BI875194
EST:     TAAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|7686812|gb|AW757460.1|AW757460
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCG
EST: gi|14240266|gb|BG859082.1|BG859082
EST:     TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGG                         ACCCCATCTTCAAGGGCAACCAAGGTGCCCAACCCGGAGATGGGCTACCCC
genomic: TGAGGTCCGCCGCTGGCAGGACTACAAGAACTTCGGCTCGGTCAACGAGGgtgggtagga ... ttgatcacagACCCCATCTTCAAGGGCAA-CAAGGTGCCCAACCCGGAGATGGGCTACCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagagcgccatggctccagaactgactgcgcgctttgctttcccttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG
                               cgctttgctttccctt  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgggtaggacgggttggacgggttggagagatgggctgtgtatggcgtgccgctcggcgttgtgtgtgtgtggcagaacatgcaagctcatcacacagagcgccatggctccagaactgactgcgcgctttgctttcccttgatcacagACCCCATCTTCAAGGGCAACAAGGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG