1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaccggtcctctcagccgtcgcaaacgctggatactgcaccaccgcgctcacccacccggccctctgtctgttgcccctgcctctccctctcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCAGCACACACACCGCCGCCTGACGCTCATAAAGAACGAGATCGATGCGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP06464 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCG GGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCAEST: gi|34980742|gb|CF554771.1|CF554771
genomic: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCGgtgagttaga ... tcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCA
EST: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCG GGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCAEST: gi|34980740|gb|CF554769.1|CF554769
genomic: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCGgtgagttaga ... tcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCA
EST: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCG GGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCA
genomic: GATGACGAGTACATCGCCACGCCGTACAAGTCAGCGGGCCCGGCGCGCCGgtgagttaga ... tcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCA
cgctcacccacccggccctctgtctgttgcccctgcctctccctctcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCAGCACACACACCGCCGCCTGACGCTCATAAAGAACGAGATCGATGCGGCG
cgctcac putative branch site (score: 3)
ccctctgtctgttgcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccggtcctctcagccgtcgcaaacgctggatactgcaccaccgcgctcacccacccggccctctgtctgttgcccctgcctctccctctcccacgtagGGAGTTGTCCCCCATGGAGGAGCTGCTCTCTTCCGCGCTGAGCGCCAGCCAGCACACACACCGCCGCCTGACGCTCATAAAGAACGAGATCGATGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - tcgcaaa
- - - - - - - - - - - - - - - - - - -caccacc
- - - - - - - - - - - - - - - - - - - - - - - - -cacccac