1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccgcaatcctggtaaactcctgacaaggtcatgactgccatacatcgcaacctaaacactaaactcatctttccttctgcgtgcaaacgtactgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGGAGCGGCAGCAGACGGAGATGGACGTCAAGTACGGGTACGGCAGCGATGA
species | Chlamydomonas reinhardtii |
transcript | EDP06464 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGAACGAGGCGGTGGAGGCAACCACGG GCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGGEST: gi|34980742|gb|CF554771.1|CF554771
genomic: CGGAGAACGAGGCGGTGGAGGCAACCACGGgtatgtggta ... actgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGG
EST: CGGAGAACGAGGCGGTGGAGGCAACCACGG GCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGGEST: gi|34980740|gb|CF554769.1|CF554769
genomic: CGGAGAACGAGGCGGTGGAGGCAACCACGGgtatgtggta ... actgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGG
EST: CGGAGAACGAGGCGGTGGAGGCAACCACGG GCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGG
genomic: CGGAGAACGAGGCGGTGGAGGCAACCACGGgtatgtggta ... actgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGG
cgcaacctaaacactaaactcatctttccttctgcgtgcaaacgtactgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGGAGCGGCAGCAGACGGAGATGGACGTCAAGTACGGGTACGGCAGCGATGA
cactaaa putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcaatcctggtaaactcctgacaaggtcatgactgccatacatcgcaacctaaacactaaactcatctttccttctgcgtgcaaacgtactgtggcagGCTCGTCGCTGTTCAGCAACAGCTTCCGGTCTGCGCTAAAGGAGTCTCTGGAGCGGCAGCAGACGGAGATGGACGTCAAGTACGGGTACGGCAGCGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - -aaactcc
- - - - - - - - - - - - - - - atgactg
- - - - - - - - - - - - - - - - - - - -atacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacgt