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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgttgcggtcttgcttgatgcttcgggaacctaggactgattttgcgtccttgttgcttttgaggcctgatgggcgtttttgccgagctctaacgcttagattacgctgctgctccttgttgccgtcgcaatctaccaaacccaaatctcactggctatgccccccggccactcgcacgttgtagGCGCTGTGGCTATCCTGAACGTGGGGAGCGCGGCAGGAGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP06426
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6544296|gb|AV390080.1|AV390080
EST:     GGAGCTGCGCACGGACCTGCGCAAGAAGGAGGAGAGGCTGCAACAGGACG                         GCGCTGTGGCTATCCTGAACGTGGGGAGCGCGGCAGGAGCCG
genomic: GGAGCTGCGCACGGACCTGCGCAAGAAGGAGGAGAGGCTGCAACAGGACGgtgagcgttg ... cacgttgtagGCGCTGTGGCTATCCTGAACGTGGGGAGCGCGGCAGGAGCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaccaaacccaaatctcactggctatgccccccggccactcgcacgttgtagGCGCTGTGGCTATCCTGAACGTGGGGAGCGCGGCAGGAGCCG
               atctcac  putative branch site (score: 3)