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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCCCGCCCGTGGCATTCCCGCTGATATTCTGGCGCTGTCCGTGCCCATCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggacagggcgcagggcgaggcaatcgagctttgccgccgagtttgtttgcgactcaggaggctctgttggcaccctagcctgcgtcctctttaggtgcctcattatagcctgctgtgctttgcgattggcttgccaaccgcggtctgctgccccacaaattgcccaccgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06413
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6543180|gb|AV388964.1|AV388964
EST:     TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC                         CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
EST: gi|49459203|gb|BP087116.1|BP087116
EST:     TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC                         CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
EST: gi|22049487|gb|BQ808824.1|BQ808824
EST:     TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC                         CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC