Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6543180|gb|AV388964.1|AV388964EST: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
EST:
gi|49459203|gb|BP087116.1|BP087116EST: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
EST:
gi|22049487|gb|BQ808824.1|BQ808824EST: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGC CACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
genomic: TCGTCTTCGCGGCGGGCGCCTTCAGCACCATGCTTTACCGCGTCATCCGCgtaagtggac ... ccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtggacagggcgcagggcgaggcaatcgagctttgccgccgagtttgtttgcgactcaggaggctctgttggcaccctagcctgcgtcctctttaggtgcctcattatagcctgctgtgctttgcgattggcttgccaaccgcggtctgctgccccacaaattgcccaccgacagCACGACCCCGAGCAGACTGCGGGCATCACGCCTGAGACTGCTGAGGCAGCCAAGAAGGGTGACCAGTTCAAGAACTCCATTCGCTCAATGTTCGTGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC